PoplarV1, Main, Exploration, bibRecord, 002944

Poplar wood rays are involved in seasonal remodeling of tree physiology.

Identifieur interne : 002944 ( Main/Exploration ); précédent : 002943; suivant : 002945

Poplar wood rays are involved in seasonal remodeling of tree physiology.

Auteurs : Christina Larisch [Allemagne] ; Marcus Dittrich ; Henning Wildhagen ; Silke Lautner ; Jörg Fromm ; Andrea Polle ; Rainer Hedrich ; Heinz Rennenberg ; Tobias Müller ; Peter Ache

Source :

Plant physiology [ 1532-2548 ] ; 2012.

RBID : pubmed:22992511

Descripteurs français

KwdFr :
- ARN messager (génétique), ARN messager (métabolisme), Acides aminés (métabolisme), Arbres (cytologie), Arbres (génétique), Arbres (physiologie), Arbres (ultrastructure), Bois (cytologie), Bois (génétique), Bois (physiologie), Bois (ultrastructure), Chromatographie en phase liquide à haute performance (MeSH), Chromatographie gazeuse-spectrométrie de masse (MeSH), Facteurs temps (MeSH), Gènes de plante (génétique), Microdissection au laser (MeSH), Métabolome (génétique), Populus (cytologie), Populus (génétique), Populus (physiologie), Populus (ultrastructure), Régulation de l'expression des gènes végétaux (MeSH), Régulation positive (génétique), Saisons (MeSH).
MESH :
- cytologie : Arbres, Bois, Populus.
- génétique : ARN messager, Arbres, Bois, Gènes de plante, Métabolome, Populus, Régulation positive.
- métabolisme : ARN messager, Acides aminés.
- physiologie : Arbres, Bois, Populus.
- ultrastructure : Arbres, Bois, Chromatographie en phase liquide à haute performance, Chromatographie gazeuse-spectrométrie de masse, Facteurs temps, Microdissection au laser, Populus, Régulation de l'expression des gènes végétaux, Saisons.

English descriptors

KwdEn :
- Amino Acids (metabolism), Chromatography, High Pressure Liquid (MeSH), Gas Chromatography-Mass Spectrometry (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (genetics), Laser Capture Microdissection (MeSH), Metabolome (genetics), Populus (cytology), Populus (genetics), Populus (physiology), Populus (ultrastructure), RNA, Messenger (genetics), RNA, Messenger (metabolism), Seasons (MeSH), Time Factors (MeSH), Trees (cytology), Trees (genetics), Trees (physiology), Trees (ultrastructure), Up-Regulation (genetics), Wood (cytology), Wood (genetics), Wood (physiology), Wood (ultrastructure).
MESH :
- chemical , genetics : RNA, Messenger.
- chemical , metabolism : Amino Acids, RNA, Messenger.
- cytology : Populus, Trees, Wood.
- genetics : Genes, Plant, Metabolome, Populus, Trees, Up-Regulation, Wood.
- physiology : Populus, Trees, Wood.
- ultrastructure : Populus, Trees, Wood.
- Chromatography, High Pressure Liquid, Gas Chromatography-Mass Spectrometry, Gene Expression Regulation, Plant, Laser Capture Microdissection, Seasons, Time Factors.

Abstract

Understanding seasonality and longevity is a major challenge in tree biology. In woody species, growth phases and dormancy follow one another consecutively. In the oldest living individuals, the annual cycle may run for more than 1,000 years. So far, however, not much is known about the processes triggering reactivation from dormancy. In this study, we focused on wood rays, which are known to play an important role in tree development. The transition phase from dormancy to flowering in early spring was compared with the phase of active growth in summer. Rays from wood samples of poplar (Populus × canescens) were enriched by laser microdissection, and transcripts were monitored by poplar whole-genome microarrays. The resulting seasonally varying complex expression and metabolite patterns were subjected to pathway analyses. In February, the metabolic pathways related to flower induction were high, indicating that reactivation from dormancy was already taking place at this time of the year. In July, the pathways related to active growth, like lignin biosynthesis, nitrogen assimilation, and defense, were enriched. Based on "marker" genes identified in our pathway analyses, we were able to validate periodical changes in wood samples by quantitative polymerase chain reaction. These studies, and the resulting ray database, provide new insights into the steps underlying the seasonality of poplar trees.

DOI: 10.1104/pp.112.202291
PubMed: 22992511
PubMed Central: PMC3490584

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Gas Chromatography-Mass Spectrometry (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genes, Plant (genetics)</term>
<term>Laser Capture Microdissection (MeSH)</term>
<term>Metabolome (genetics)</term>
<term>Populus (cytology)</term>
<term>Populus (genetics)</term>
<term>Populus (physiology)</term>
<term>Populus (ultrastructure)</term>
<term>RNA, Messenger (genetics)</term>
<term>RNA, Messenger (metabolism)</term>
<term>Seasons (MeSH)</term>
<term>Time Factors (MeSH)</term>
<term>Trees (cytology)</term>
<term>Trees (genetics)</term>
<term>Trees (physiology)</term>
<term>Trees (ultrastructure)</term>
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<term>Bois (physiologie)</term>
<term>Bois (ultrastructure)</term>
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<term>Chromatographie gazeuse-spectrométrie de masse (MeSH)</term>
<term>Facteurs temps (MeSH)</term>
<term>Gènes de plante (génétique)</term>
<term>Microdissection au laser (MeSH)</term>
<term>Métabolome (génétique)</term>
<term>Populus (cytologie)</term>
<term>Populus (génétique)</term>
<term>Populus (physiologie)</term>
<term>Populus (ultrastructure)</term>
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<term>Gas Chromatography-Mass Spectrometry</term>
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<front><div type="abstract" xml:lang="en">Understanding seasonality and longevity is a major challenge in tree biology. In woody species, growth phases and dormancy follow one another consecutively. In the oldest living individuals, the annual cycle may run for more than 1,000 years. So far, however, not much is known about the processes triggering reactivation from dormancy. In this study, we focused on wood rays, which are known to play an important role in tree development. The transition phase from dormancy to flowering in early spring was compared with the phase of active growth in summer. Rays from wood samples of poplar (Populus × canescens) were enriched by laser microdissection, and transcripts were monitored by poplar whole-genome microarrays. The resulting seasonally varying complex expression and metabolite patterns were subjected to pathway analyses. In February, the metabolic pathways related to flower induction were high, indicating that reactivation from dormancy was already taking place at this time of the year. In July, the pathways related to active growth, like lignin biosynthesis, nitrogen assimilation, and defense, were enriched. Based on "marker" genes identified in our pathway analyses, we were able to validate periodical changes in wood samples by quantitative polymerase chain reaction. These studies, and the resulting ray database, provide new insights into the steps underlying the seasonality of poplar trees.</div>
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<Title>Plant physiology</Title>
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<Abstract><AbstractText>Understanding seasonality and longevity is a major challenge in tree biology. In woody species, growth phases and dormancy follow one another consecutively. In the oldest living individuals, the annual cycle may run for more than 1,000 years. So far, however, not much is known about the processes triggering reactivation from dormancy. In this study, we focused on wood rays, which are known to play an important role in tree development. The transition phase from dormancy to flowering in early spring was compared with the phase of active growth in summer. Rays from wood samples of poplar (Populus × canescens) were enriched by laser microdissection, and transcripts were monitored by poplar whole-genome microarrays. The resulting seasonally varying complex expression and metabolite patterns were subjected to pathway analyses. In February, the metabolic pathways related to flower induction were high, indicating that reactivation from dormancy was already taking place at this time of the year. In July, the pathways related to active growth, like lignin biosynthesis, nitrogen assimilation, and defense, were enriched. Based on "marker" genes identified in our pathway analyses, we were able to validate periodical changes in wood samples by quantitative polymerase chain reaction. These studies, and the resulting ray database, provide new insights into the steps underlying the seasonality of poplar trees.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Larisch</LastName>
<ForeName>Christina</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Department of Botany I, University of Würzburg, 97082 Wuerzburg, Germany.</Affiliation>
</AffiliationInfo>
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<ForeName>Andrea</ForeName>
<Initials>A</Initials>
</Author>
<Author ValidYN="Y"><LastName>Hedrich</LastName>
<ForeName>Rainer</ForeName>
<Initials>R</Initials>
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<ForeName>Heinz</ForeName>
<Initials>H</Initials>
</Author>
<Author ValidYN="Y"><LastName>Müller</LastName>
<ForeName>Tobias</ForeName>
<Initials>T</Initials>
</Author>
<Author ValidYN="Y"><LastName>Ache</LastName>
<ForeName>Peter</ForeName>
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Poplar wood rays are involved in seasonal remodeling of tree physiology.

Poplar wood rays are involved in seasonal remodeling of tree physiology.

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